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yclab

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yclab

Computational epigenetics & cell lineage tracing — sequencing methods to decode RNA modifications (m⁶A · m⁵C · Ψ) at single-base resolution.

The Hong Kong Polytechnic University

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🧬 RNA modifications

🅐 m⁶A · N⁶-methyladenosine 🅒 m⁵C · 5-methylcytosine 🅟 Ψ · pseudouridine
m6A-CAMseq · CAM-seq
transcriptome-wide m⁶A		 m5C-UBSseq · UBS-seq
m⁵C in DNA & RNA		 pseudoU-BIDseq · BID-seq
mRNA Ψ at base resolution
m6A-SACseq · SAC-seq
quantitative whole-transcriptome m⁶A		 pseudoU-PUMseq · PUM-seq
Ψ-PUM-seq pipeline
m6A-eTAMseq · eTAM-seq
enzymatic single-base m⁶A

🧪 Other pipelines

SLOTH metagene scmd-calmorph
single-cell lineage tracing metagene profiling & visualization budding-yeast morphology

Popular repositories Loading

  1. m5C-UBSseq m5C-UBSseq Public

    Forked from y9c/m5C-UBSseq

    🧪 Ultrafast bisulfite

    Python

  2. .github .github Public

  3. pseudoU-BIDseq pseudoU-BIDseq Public

    Forked from y9c/pseudoU-BIDseq

    🧪 Pipeline for detecting Ψ modification

    Python

  4. m6A-SACseq m6A-SACseq Public

    Forked from y9c/m6A-SACseq

    🧪 Optimized protocol for m6A-SAC-seq

    Python

  5. m6A-CAMseq m6A-CAMseq Public

    Forked from y9c/m6A-CAMseq

    🧪 m6A-CAM-seq

    Shell

  6. m6A-eTAMseq m6A-eTAMseq Public

    Forked from y9c/m6A-eTAMseq

    🧪 An Enzymatic Method for Assaying m6A Modifications at Single Base Resolution

    Dockerfile

Repositories

Showing 10 of 12 repositories
  • m6A-CAMseq Public Forked from y9c/m6A-CAMseq

    🧪 m6A-CAM-seq

    yclab/m6A-CAMseq's past year of commit activity
    Shell 0 GPL-3.0 7 0 0 Updated Sep 9, 2026
  • .github Public
    yclab/.github's past year of commit activity
    0 0 0 0 Updated Aug 30, 2026
  • dichromat Public Forked from y9c/dichromat
    yclab/dichromat's past year of commit activity
    Python 0 2 0 0 Updated Aug 18, 2026
  • trichromat Public Forked from y9c/trichromat

    🧬 A general pipeline for data processing of 3 letter sequencing methods.

    yclab/trichromat's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Aug 11, 2026
  • scmd-calmorph Public Forked from y9c/scmd-calmorph

    Tool for quantify morphological trait of budding yeast (fork version maintained by Chang)

    yclab/scmd-calmorph's past year of commit activity
    Java 0 1 0 0 Updated Dec 19, 2025
  • metagene Public Forked from y9c/metagene

    Metagene Profiling Analysis and Visualization

    yclab/metagene's past year of commit activity
    Python 0 4 0 0 Updated Oct 31, 2025
  • m6A-eTAMseq Public Forked from y9c/m6A-eTAMseq

    🧪 An Enzymatic Method for Assaying m6A Modifications at Single Base Resolution

    yclab/m6A-eTAMseq's past year of commit activity
    Dockerfile 0 2 0 0 Updated Aug 22, 2025
  • m6A-SACseq Public Forked from y9c/m6A-SACseq

    🧪 Optimized protocol for m6A-SAC-seq

    yclab/m6A-SACseq's past year of commit activity
    Python 0 GPL-3.0 3 0 0 Updated Jun 16, 2025
  • pseudoU-PUMseq Public Forked from y9c/pseudoU-PUMseq

    🧪 Ψ-PUMseq

    yclab/pseudoU-PUMseq's past year of commit activity
    0 1 0 0 Updated May 10, 2025
  • pseudoU-BIDseq Public Forked from y9c/pseudoU-BIDseq

    🧪 Pipeline for detecting Ψ modification

    yclab/pseudoU-BIDseq's past year of commit activity
    Python 0 GPL-3.0 6 0 0 Updated May 8, 2024
View all repositories

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